Function reference • LinkR

Run the app

linkr(): Run the Shiny Application

Import & manage data

Functions used to import data into LinkR & manage data from LinkR

add_persons_to_subset(): Add patients to a subset

add_vocabulary_concept(): Add vocabulary concept

get_vocabulary_concept(): Get vocabulary concept

import_dataset(): Import a dataset

import_vocabulary_table(): Import a vocabulary table

remove_persons_from_subset(): Remove patients from a subset

run_dataset_code(): Run dataset code

Shiny app server functions

Functions used in Shiny server function

add_log_entry(): Add a log entry

add_settings_new_data(): Add new settings data

capture_python_output(): Capture python output

coalesce2(): Coalesce2

convert_tibble_to_list(): Convert a tibble to list

db_create_table(): Check user authentification

db_create_tables(): Create tables

delete_element(): Delete element

execute_settings_code(): Execute / test code after edition

get_authorized_data(): Get authorized data for a user

get_col_names(): Get column names

get_db(): Get database DBI object

get_last_row(): Get last row

get_remote_db(): Connection to remote database

insert_default_data(): Insert default data

is_integer_or_integer64(): Is integer

load_database(): Load database

monitor_perf(): Monitor performances

now(): Get system time

prepare_data_datatable(): Prepare data for datatable

report_bug(): Report bug

resize_and_pad_image(): Resize and pad image

save_settings_code(): Save code edition

save_settings_datatable_updates(): Save updates in datatable

save_settings_options(): Save options

show_or_hide_cards(): Show or hide cards

update_r(): Update r variable

update_settings_datatable(): Update datatable

Shiny app UI functions

Functions used in Shiny UI function

forbidden_card(): Render cards where user has no access

format_datetime(): Format datetime

get_singular(): Get singular form of a word

get_plural(): Get plural form of a word

make_card(): Make a shiny.fluent card

make_combobox(): Make combobox

make_dropdown(): Make dropdown

make_layout(): Make layout

make_page(): Make a page

make_people_picker(): Make people picker

make_shiny_ace_card(): Make a shiny.fluent card

make_textfield(): Make textfield

make_toggle(): Make toggle

render_datatable(): Render a DT datatable

render_settings_creation_card(): Render UI of settings creation card

render_settings_datatable_card(): Render UI of settings datatable card

render_settings_default_elements(): Render UI of settings default elements

show_message_bar(): Display a message bar